https://www.organicdatascience.org/gpf/api.php?action=feedcontributions&user=Yolanda&feedformat=atomGeoscience Paper of the Future - User contributions [en]2024-03-28T10:23:27ZUser contributionsMediaWiki 1.24.1https://www.organicdatascience.org/gpf/index.php?title=GLM&diff=12189GLM2016-08-23T23:05:16Z<p>Yolanda: Creating new page with Category: Object</p>
<hr />
<div>[[Category:Object]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=PIHM&diff=12188PIHM2016-08-23T23:04:58Z<p>Yolanda: Creating new page with Category: Object</p>
<hr />
<div>[[Category:Object]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_GPF_overview_article&diff=12187Plan GPF overview article2016-08-23T23:04:47Z<p>Yolanda: Added PropertyValue: Lake model = GLM</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Catchment model=PIHM|<br />
Data source=LTER|<br />
Lake model=GLM|<br />
Owner=Yolanda_Gil|<br />
Participants=Cedric_David|<br />
Participants=Ibrahim_Demir|<br />
Participants=Heath_Mills|<br />
Participants=Suzanne_Pierce|<br />
Participants=Mimi_Tzeng|<br />
Participants=Sandra_Villamizar|<br />
Participants=Xuan_Yu|<br />
Participants=Wally_Fulweiler|<br />
Participants=Leif_Karlstrom|<br />
Participants=Jordan_Read|<br />
Participants=Kim_Miller|<br />
Participants=Ji-Hyun_Oh|<br />
Participants=Allen_Pope|<br />
Participants=Kyo_Lee|<br />
StartDate=2015-03-13|<br />
SubTask=Write_introduction|<br />
SubTask=Write_about_what_is_a_GPF|<br />
SubTask=Write_about_the_overall_process_activities_and_timeline|<br />
SubTask=Write_about_each_author_s_motivation_to_participate|<br />
SubTask=Write_overview_of_each_article_s_geoscience_area_science_goals_type_of_analysis_datasets_results|<br />
SubTask=Write_about_ensuring_that_software_is_usable|<br />
SubTask=Write_about_making_data_accessible|<br />
SubTask=Write_about_documenting_the_provenance_of_the_results|<br />
SubTask=Write_about_making_software_executable_by_others|<br />
SubTask=Write_about_making_software_accessible|<br />
SubTask=Write_about_documenting_domain_characteristics|<br />
SubTask=Write_about_documenting_quality_of_software_and_data|<br />
SubTask=Write_about_preparing_the_article_for_publication|<br />
TargetDate=2015-06-26|<br />
Type=Medium}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Property:Lake_model&diff=12186Property:Lake model2016-08-23T23:04:46Z<p>Yolanda: Creating new Property</p>
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<div>Property type: [[has type::Page]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Property:Catchment_model&diff=12184Property:Catchment model2016-08-23T23:04:37Z<p>Yolanda: Creating new Property</p>
<hr />
<div>Property type: [[has type::Page]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_GPF_overview_article&diff=12185Plan GPF overview article2016-08-23T23:04:37Z<p>Yolanda: Added PropertyValue: Catchment model = PIHM</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Catchment model=PIHM|<br />
Data source=LTER|<br />
Owner=Yolanda_Gil|<br />
Participants=Cedric_David|<br />
Participants=Ibrahim_Demir|<br />
Participants=Heath_Mills|<br />
Participants=Suzanne_Pierce|<br />
Participants=Mimi_Tzeng|<br />
Participants=Sandra_Villamizar|<br />
Participants=Xuan_Yu|<br />
Participants=Wally_Fulweiler|<br />
Participants=Leif_Karlstrom|<br />
Participants=Jordan_Read|<br />
Participants=Kim_Miller|<br />
Participants=Ji-Hyun_Oh|<br />
Participants=Allen_Pope|<br />
Participants=Kyo_Lee|<br />
StartDate=2015-03-13|<br />
SubTask=Write_introduction|<br />
SubTask=Write_about_what_is_a_GPF|<br />
SubTask=Write_about_the_overall_process_activities_and_timeline|<br />
SubTask=Write_about_each_author_s_motivation_to_participate|<br />
SubTask=Write_overview_of_each_article_s_geoscience_area_science_goals_type_of_analysis_datasets_results|<br />
SubTask=Write_about_ensuring_that_software_is_usable|<br />
SubTask=Write_about_making_data_accessible|<br />
SubTask=Write_about_documenting_the_provenance_of_the_results|<br />
SubTask=Write_about_making_software_executable_by_others|<br />
SubTask=Write_about_making_software_accessible|<br />
SubTask=Write_about_documenting_domain_characteristics|<br />
SubTask=Write_about_documenting_quality_of_software_and_data|<br />
SubTask=Write_about_preparing_the_article_for_publication|<br />
TargetDate=2015-06-26|<br />
Type=Medium}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=LTER&diff=12183LTER2016-08-23T23:04:05Z<p>Yolanda: Creating new page with Category: Object</p>
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<div>[[Category:Object]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_GPF_overview_article&diff=12182Plan GPF overview article2016-08-23T23:03:50Z<p>Yolanda: Added PropertyValue: Data source = LTER</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Data source=LTER|<br />
Owner=Yolanda_Gil|<br />
Participants=Cedric_David|<br />
Participants=Ibrahim_Demir|<br />
Participants=Heath_Mills|<br />
Participants=Suzanne_Pierce|<br />
Participants=Mimi_Tzeng|<br />
Participants=Sandra_Villamizar|<br />
Participants=Xuan_Yu|<br />
Participants=Wally_Fulweiler|<br />
Participants=Leif_Karlstrom|<br />
Participants=Jordan_Read|<br />
Participants=Kim_Miller|<br />
Participants=Ji-Hyun_Oh|<br />
Participants=Allen_Pope|<br />
Participants=Kyo_Lee|<br />
StartDate=2015-03-13|<br />
SubTask=Write_introduction|<br />
SubTask=Write_about_what_is_a_GPF|<br />
SubTask=Write_about_the_overall_process_activities_and_timeline|<br />
SubTask=Write_about_each_author_s_motivation_to_participate|<br />
SubTask=Write_overview_of_each_article_s_geoscience_area_science_goals_type_of_analysis_datasets_results|<br />
SubTask=Write_about_ensuring_that_software_is_usable|<br />
SubTask=Write_about_making_data_accessible|<br />
SubTask=Write_about_documenting_the_provenance_of_the_results|<br />
SubTask=Write_about_making_software_executable_by_others|<br />
SubTask=Write_about_making_software_accessible|<br />
SubTask=Write_about_documenting_domain_characteristics|<br />
SubTask=Write_about_documenting_quality_of_software_and_data|<br />
SubTask=Write_about_preparing_the_article_for_publication|<br />
TargetDate=2015-06-26|<br />
Type=Medium}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Property:Data_source&diff=12181Property:Data source2016-08-23T23:03:49Z<p>Yolanda: Creating new Property</p>
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<div>Property type: [[has type::Page]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Document_software_by_specifying_metadata&diff=12180Document software by specifying metadata2015-09-20T21:52:33Z<p>Yolanda: /* Suggested Readings */</p>
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<div><br />
== What This Task Involves ==<br />
<br />
The training session and training materials indicate how to:<br />
<br />
* Describe your software so that others can find it and use it by describing metadata to:<br />
*# Uniquely identify the software<br />
*# Understand what the software does<br />
*# Run the software<br />
*# Do research with the software<br />
*# Get support if you have questions or find bugs<br />
*# Contribute to the development of the software<br />
<br />
== Training Materials ==<br />
<br />
This training session will be held on May 1, 2015:<br />
<br />
* [https://www.dropbox.com/s/5xa7fr57nbfgwnr/DescribingSoftwareThroughMetadata.pdf?dl=0 '''Presentation: Documenting software by specifying metadata''']<br />
<br />
=== Suggested Readings ===<br />
<br />
* [http://www.isi.edu/~gil/papers/gil-etal-kcap15b.pdf "OntoSoft: Capturing Scientific Software Metadata"]. Yolanda Gil, Varun Ratnakar, and Daniel Garijo. Proceedings of the Eighth ACM International Conference on Knowledge Capture, Palisades, NY, October 2015.<br />
<br />
* [http://ontosoft.org/ OntoSoft project description]<br />
<br />
* [http://ontosoft.org/ontology/software/ OntoSoft ontology]<br />
<br />
== What To Do ==<br />
<br />
* Describe your software using the GeoSoft [http://www.geosoft-earthcube.org/portal/ software registry]<br />
** You do not need to log in<br />
** Select "Software" from the top, then select "Publish your software"<br />
** It will show you a roadmap of 6 categories and when you select one it will walk you through questions<br />
** Special features:<br />
*** If your software is in GitHub, once you provide the URL then GeoSoft will extract some metadata automatically from GitHub and ask you if you want to incorporate it<br />
** If your software is described in CSDMS or in the NOAAA NCDC repository, it will already be in the system<br />
** Save the responses when you are done<br />
** GeoSoft is still a prototype, we appreciate your comments and feedback!<br />
* Once you are done, click on the name of the software<br />
** At the top you will be able to download an HTML page with the description of the software, which you can put in your code page or project page<br />
** You can also download RDF/XML or JSON if you prefer<br />
<br />
<br />
[[Category:Task]]<br />
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{{#set:}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Hold_regular_telecons&diff=12175Hold regular telecons2015-08-07T02:59:37Z<p>Yolanda: /* Telecon Friday August 7, 2015 */</p>
<hr />
<div>[[Category:Task]]<br />
<br />
== Call Time and Access Codes == <br />
<br />
The new regular call time is Fridays at 12:30-2PM PDT every other week starting June 12. <br />
To join the meeting:<br />
<br />
# Online: <br />
#* [https://usc-isi.webex.com/usc-isi Join WebEx meeting]<br />
#* Select "OntoSoft GPF"<br />
#* Meeting number: 804 483 054<br />
#* Meeting password: onto<br />
<br />
# By phone<br />
#* Call 1-650-479-3208<br />
#* Access code: 804 483 054<br />
<br />
The old call time was Fridays at 2-3:30PM PDT every other week in Spring 2015 starting February 6 until the end of May 2015. The time was selected based on a [http://doodle.com/arp345are8nsgbe9#table doodle poll].<br />
<br />
== Telecon Friday February 6, 2015 ==<br />
<br />
To prepare for the call, you should select a paper that you would like to use for the work. It could be a paper of yours (published or in preparation), or a seminal paper by someone else in your field that you would like to reproduce/understand/make available to the community in a better format. You can form a team to work on the same paper if you prefer.<br />
<br />
=== Agenda ===<br />
<br />
# What is a GPF and what it would entail<br />
#* [[Discuss_what_we_will_consider_a_GPF | Discussion: What is a GPF]]<br />
# Planning the GPF activities for the next 4-5 months<br />
#* [[Plan_overall_timeline | Review proposed timeline]]<br />
# Questions from everyone about their particular papers<br />
# How the web site works<br />
#* Learn the basics of how wikis work: [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the detailed [//meta.wikimedia.org/wiki/Help:Contents User's Guide].<br />
#* The left side is for navigating different tasks. You won't need to create tasks yourself, but if you are curious about how to do that see [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here].<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/1Ps-mGDZ1d0KB1QWcYPkUIRw7yfVtHk9FXyskLVD9fdE/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday February 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Training on how to use this wiki, here is [[Main_Page#Using_this_Wiki | an overview]]<br />
# Report from everyone on the prior task: [[Ensure_software_is_usable | ensuring software is usable]]<br />
# Training about the next task: [[Make_data_accessible | making data accessible]], here are the [https://www.dropbox.com/s/lekb1yl1r7ruzs8/GPF-MakingDataAccessible-20Feb2015.pdf?dl=0 slides for the presentation], further readings are provided [[Make_data_accessible | here]]<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/14CCyafFNaP8uYCF_zruuD-ieFPdLatohoyhkuYw040U/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday March 6, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_data_accessible | making data accessible]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results | document the provenance of the results]], here are the [https://www.dropbox.com/s/9bumgm4t6on1bis/GPF-Provenance-6Mar2015.pdf?dl=0 slides for the presentation]<br />
# Q/A about F2F meeting<br />
<br />
== Face-to-Face Meeting March 13, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Writing a proposal for the special issue that we can bring up to the publisher/editors. Here is an [[Develop_proposal_for_special_issue | outline/draft of what it should contain]]<br />
#* Write an introduction, here are [[Develop_proposal_for_special_issue#Background:_Why_a_Special_Issue_on_Geoscience_Papers_of_the_Future.3F | some notes]]<br />
#* Include a brief description of each paper, here are [[Develop_proposal_for_special_issue#Papers_to_be_included | some notes]]<br />
#* Discuss the criteria to consider a submission for this special issue, i.e., what is a GPF and how will we tell reviewers to judge the papers. Here are [[Develop_proposal_for_special_issue#Special_Issue_Review_Criteria | some notes]]<br />
#* Agree on the [[Develop_proposal_for_special_issue#Special_Issue_Editors | editors for the special issue]]<br />
#* Agree to a [[Develop_proposal_for_special_issue#Tentative_Timeline | tentative timeline]]<br />
# Review of the [[Plan_overall_timeline |timeline of tasks]]<br />
#* Is everyone clear on what needs to be done? What topics should we cover in upcoming telecons: GitHub, WINGS, PROV, Standard Names,...?<br />
# Review the [[Generate_GPFs | status of each paper]]<br />
# Plan the [[Plan_GPF_overview_article | joint overview article]]<br />
<br />
== Telecon Friday March 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Summary of the F2F meeting and the plans for the special issue<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results | document the provenance of the results]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Document the data analysis method as a workflow]]<br />
<br />
== Telecon Friday April 3, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Documenting the data analysis method as a workflow]]<br />
# Training about the next task: [[Make_software_accessible | Making software accessible]]<br />
<br />
== Telecon Friday April 17, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_accessible | Making software accessible]]<br />
# Training about the next task: [[Make_software_executable_by_others | Making software executable by others]]<br />
<br />
== Telecon Friday May 1, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_executable_by_others | Making software executable by others]]<br />
# Training about the next task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
#* Using [http://www.geosoft-earthcube.org/ GeoSoft]<br />
<br />
== Telecon Friday May 15, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
# Training about the next task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
<br />
== Face-To-Face Meeting at the EarthCube AHM, Wednesday May 27, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Announcement of the [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292333-5084/homepage/call_for_papers.htm Special Issue of AGU Earth and Space Science on Geoscience Papers of the Future]<br />
# The [http://www.geosoft-earthcube.org/gpf/ Geoscience Paper of the Future Initiative]<br />
# Report from everyone on the prior task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
# Report from everyone about timeline for remaining tasks to do on their papers and for writing the final draft for submission to the special issue<br />
<br />
== Telecon Friday June 12, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from the EarthCube poster and session presentations<br />
# The choice of submission for each article: [http://www.geosoft-earthcube.org/gpf/special-issue research article or technical report]<br />
#* [[Main_Page#Roster_of_GeoSoft_GPF_Papers | Tentative categories]]<br />
# A proposal for a format for the GPF aspects of the papers<br />
#* Publisher's [[Create_format_and_guidelines | required format]]<br />
# Plan [[Plan_timeline_for_all_submissions | timeline for each submission]]<br />
# Planning to get the joint paper written (by June 25?)<br />
#* [https://www.dropbox.com/s/ow8zbkuo4zdtiwv/GPF-Journey-v1.docx?dl=0 Raw outline and first draft are available here]<br />
<br />
== Training Catch Up Thursday June 18, 2015 ==<br />
<br />
* '''Special time: 8:30-10am PDT'''<br />
* Call-in details: <br />
** Use this [https://usc-isi.webex.com/usc-isi/j.php?MTID=ma65d086fa635822d66296ca45fe68f11 Webex link] or call 1-650-479-3208<br />
** Meeting number/access code: 807 035 115<br />
** Meeting password: special<br />
<br />
* Schedule:<br />
** 8:30-9 — Publishing and citing data<br />
** 9-9:30 — Publishing and citing software<br />
** 9:30-10 — Describing workflows and provenance of results<br />
<br />
== Telecon Friday June 19, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# A proposal for a [[Develop_GPF_Checklist | GPF checklist for authors]]<br />
# Review contributions and status of joint paper (See shared Dropbox folder)<br />
# Thoughts on the [http://www.geosoft-earthcube.org/gpf/ GPF Initiative: partners, sponsors, steering committee, etc.]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}<br />
<br />
== Telecon Friday August 7, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Review joint GPF paper (all)<br />
#* Add pointers about the recommendations (Cedric)<br />
#* Add an example?<br />
#* Any other comments to address?<br />
#* Any acknowledgements missing?<br />
#* When should we submit?<br />
# Status of everyone's papers<br />
#* Reminder of the [[Plan_timeline_for_all_submissions | plans for mutual reviews]]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Hold_regular_telecons&diff=12174Hold regular telecons2015-08-07T02:59:14Z<p>Yolanda: /* Call Time and Access Codes */</p>
<hr />
<div>[[Category:Task]]<br />
<br />
== Call Time and Access Codes == <br />
<br />
The new regular call time is Fridays at 12:30-2PM PDT every other week starting June 12. <br />
To join the meeting:<br />
<br />
# Online: <br />
#* [https://usc-isi.webex.com/usc-isi Join WebEx meeting]<br />
#* Select "OntoSoft GPF"<br />
#* Meeting number: 804 483 054<br />
#* Meeting password: onto<br />
<br />
# By phone<br />
#* Call 1-650-479-3208<br />
#* Access code: 804 483 054<br />
<br />
The old call time was Fridays at 2-3:30PM PDT every other week in Spring 2015 starting February 6 until the end of May 2015. The time was selected based on a [http://doodle.com/arp345are8nsgbe9#table doodle poll].<br />
<br />
== Telecon Friday February 6, 2015 ==<br />
<br />
To prepare for the call, you should select a paper that you would like to use for the work. It could be a paper of yours (published or in preparation), or a seminal paper by someone else in your field that you would like to reproduce/understand/make available to the community in a better format. You can form a team to work on the same paper if you prefer.<br />
<br />
=== Agenda ===<br />
<br />
# What is a GPF and what it would entail<br />
#* [[Discuss_what_we_will_consider_a_GPF | Discussion: What is a GPF]]<br />
# Planning the GPF activities for the next 4-5 months<br />
#* [[Plan_overall_timeline | Review proposed timeline]]<br />
# Questions from everyone about their particular papers<br />
# How the web site works<br />
#* Learn the basics of how wikis work: [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the detailed [//meta.wikimedia.org/wiki/Help:Contents User's Guide].<br />
#* The left side is for navigating different tasks. You won't need to create tasks yourself, but if you are curious about how to do that see [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here].<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/1Ps-mGDZ1d0KB1QWcYPkUIRw7yfVtHk9FXyskLVD9fdE/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday February 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Training on how to use this wiki, here is [[Main_Page#Using_this_Wiki | an overview]]<br />
# Report from everyone on the prior task: [[Ensure_software_is_usable | ensuring software is usable]]<br />
# Training about the next task: [[Make_data_accessible | making data accessible]], here are the [https://www.dropbox.com/s/lekb1yl1r7ruzs8/GPF-MakingDataAccessible-20Feb2015.pdf?dl=0 slides for the presentation], further readings are provided [[Make_data_accessible | here]]<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/14CCyafFNaP8uYCF_zruuD-ieFPdLatohoyhkuYw040U/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday March 6, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_data_accessible | making data accessible]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results | document the provenance of the results]], here are the [https://www.dropbox.com/s/9bumgm4t6on1bis/GPF-Provenance-6Mar2015.pdf?dl=0 slides for the presentation]<br />
# Q/A about F2F meeting<br />
<br />
== Face-to-Face Meeting March 13, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Writing a proposal for the special issue that we can bring up to the publisher/editors. Here is an [[Develop_proposal_for_special_issue | outline/draft of what it should contain]]<br />
#* Write an introduction, here are [[Develop_proposal_for_special_issue#Background:_Why_a_Special_Issue_on_Geoscience_Papers_of_the_Future.3F | some notes]]<br />
#* Include a brief description of each paper, here are [[Develop_proposal_for_special_issue#Papers_to_be_included | some notes]]<br />
#* Discuss the criteria to consider a submission for this special issue, i.e., what is a GPF and how will we tell reviewers to judge the papers. Here are [[Develop_proposal_for_special_issue#Special_Issue_Review_Criteria | some notes]]<br />
#* Agree on the [[Develop_proposal_for_special_issue#Special_Issue_Editors | editors for the special issue]]<br />
#* Agree to a [[Develop_proposal_for_special_issue#Tentative_Timeline | tentative timeline]]<br />
# Review of the [[Plan_overall_timeline |timeline of tasks]]<br />
#* Is everyone clear on what needs to be done? What topics should we cover in upcoming telecons: GitHub, WINGS, PROV, Standard Names,...?<br />
# Review the [[Generate_GPFs | status of each paper]]<br />
# Plan the [[Plan_GPF_overview_article | joint overview article]]<br />
<br />
== Telecon Friday March 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Summary of the F2F meeting and the plans for the special issue<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results | document the provenance of the results]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Document the data analysis method as a workflow]]<br />
<br />
== Telecon Friday April 3, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Documenting the data analysis method as a workflow]]<br />
# Training about the next task: [[Make_software_accessible | Making software accessible]]<br />
<br />
== Telecon Friday April 17, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_accessible | Making software accessible]]<br />
# Training about the next task: [[Make_software_executable_by_others | Making software executable by others]]<br />
<br />
== Telecon Friday May 1, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_executable_by_others | Making software executable by others]]<br />
# Training about the next task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
#* Using [http://www.geosoft-earthcube.org/ GeoSoft]<br />
<br />
== Telecon Friday May 15, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
# Training about the next task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
<br />
== Face-To-Face Meeting at the EarthCube AHM, Wednesday May 27, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Announcement of the [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292333-5084/homepage/call_for_papers.htm Special Issue of AGU Earth and Space Science on Geoscience Papers of the Future]<br />
# The [http://www.geosoft-earthcube.org/gpf/ Geoscience Paper of the Future Initiative]<br />
# Report from everyone on the prior task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
# Report from everyone about timeline for remaining tasks to do on their papers and for writing the final draft for submission to the special issue<br />
<br />
== Telecon Friday June 12, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from the EarthCube poster and session presentations<br />
# The choice of submission for each article: [http://www.geosoft-earthcube.org/gpf/special-issue research article or technical report]<br />
#* [[Main_Page#Roster_of_GeoSoft_GPF_Papers | Tentative categories]]<br />
# A proposal for a format for the GPF aspects of the papers<br />
#* Publisher's [[Create_format_and_guidelines | required format]]<br />
# Plan [[Plan_timeline_for_all_submissions | timeline for each submission]]<br />
# Planning to get the joint paper written (by June 25?)<br />
#* [https://www.dropbox.com/s/ow8zbkuo4zdtiwv/GPF-Journey-v1.docx?dl=0 Raw outline and first draft are available here]<br />
<br />
== Training Catch Up Thursday June 18, 2015 ==<br />
<br />
* '''Special time: 8:30-10am PDT'''<br />
* Call-in details: <br />
** Use this [https://usc-isi.webex.com/usc-isi/j.php?MTID=ma65d086fa635822d66296ca45fe68f11 Webex link] or call 1-650-479-3208<br />
** Meeting number/access code: 807 035 115<br />
** Meeting password: special<br />
<br />
* Schedule:<br />
** 8:30-9 — Publishing and citing data<br />
** 9-9:30 — Publishing and citing software<br />
** 9:30-10 — Describing workflows and provenance of results<br />
<br />
== Telecon Friday June 19, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# A proposal for a [[Develop_GPF_Checklist | GPF checklist for authors]]<br />
# Review contributions and status of joint paper (See shared Dropbox folder)<br />
# Thoughts on the [http://www.geosoft-earthcube.org/gpf/ GPF Initiative: partners, sponsors, steering committee, etc.]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}<br />
<br />
== Telecon Friday August 7, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Review joint GPF paper (all)<br />
#* Add pointers about the recommendations (Cedric)<br />
#* Add an example?<br />
#* Any other comments to address?<br />
#* Any acknowledgements missing?<br />
#* When should we submit?<br />
# Status of everyone's papers<br />
#* Reminder of the [[Plan_timeline_for_all_submissions plans for mutual reviews]]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Hold_regular_telecons&diff=12173Hold regular telecons2015-08-07T02:00:22Z<p>Yolanda: /* Telecon Friday June 19, 2015 */</p>
<hr />
<div>[[Category:Task]]<br />
<br />
== Call Time and Access Codes == <br />
<br />
The new regular call time is Fridays at 12:30-2PM PDT every other week starting June 12. <br />
To join the meeting:<br />
<br />
# Online: <br />
#* [https://usc-isi.webex.com/usc-isi Join WebEx meeting]<br />
#* Select "GeoSoft GPF"<br />
#* Meeting number: 808 758 523<br />
#* Meeting password: geo123<br />
<br />
# By phone<br />
#* Call 1-650-479-3208<br />
#* Access code: 808 758 523<br />
<br />
The old call time is Fridays at 2-3:30PM PDT every other week in Spring 2015 starting February 6. The time was selected based on a [http://doodle.com/arp345are8nsgbe9#table doodle poll].<br />
<br />
== Telecon Friday February 6, 2015 ==<br />
<br />
To prepare for the call, you should select a paper that you would like to use for the work. It could be a paper of yours (published or in preparation), or a seminal paper by someone else in your field that you would like to reproduce/understand/make available to the community in a better format. You can form a team to work on the same paper if you prefer.<br />
<br />
=== Agenda ===<br />
<br />
# What is a GPF and what it would entail<br />
#* [[Discuss_what_we_will_consider_a_GPF | Discussion: What is a GPF]]<br />
# Planning the GPF activities for the next 4-5 months<br />
#* [[Plan_overall_timeline | Review proposed timeline]]<br />
# Questions from everyone about their particular papers<br />
# How the web site works<br />
#* Learn the basics of how wikis work: [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the detailed [//meta.wikimedia.org/wiki/Help:Contents User's Guide].<br />
#* The left side is for navigating different tasks. You won't need to create tasks yourself, but if you are curious about how to do that see [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here].<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/1Ps-mGDZ1d0KB1QWcYPkUIRw7yfVtHk9FXyskLVD9fdE/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday February 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Training on how to use this wiki, here is [[Main_Page#Using_this_Wiki | an overview]]<br />
# Report from everyone on the prior task: [[Ensure_software_is_usable | ensuring software is usable]]<br />
# Training about the next task: [[Make_data_accessible | making data accessible]], here are the [https://www.dropbox.com/s/lekb1yl1r7ruzs8/GPF-MakingDataAccessible-20Feb2015.pdf?dl=0 slides for the presentation], further readings are provided [[Make_data_accessible | here]]<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/14CCyafFNaP8uYCF_zruuD-ieFPdLatohoyhkuYw040U/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday March 6, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_data_accessible | making data accessible]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results | document the provenance of the results]], here are the [https://www.dropbox.com/s/9bumgm4t6on1bis/GPF-Provenance-6Mar2015.pdf?dl=0 slides for the presentation]<br />
# Q/A about F2F meeting<br />
<br />
== Face-to-Face Meeting March 13, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Writing a proposal for the special issue that we can bring up to the publisher/editors. Here is an [[Develop_proposal_for_special_issue | outline/draft of what it should contain]]<br />
#* Write an introduction, here are [[Develop_proposal_for_special_issue#Background:_Why_a_Special_Issue_on_Geoscience_Papers_of_the_Future.3F | some notes]]<br />
#* Include a brief description of each paper, here are [[Develop_proposal_for_special_issue#Papers_to_be_included | some notes]]<br />
#* Discuss the criteria to consider a submission for this special issue, i.e., what is a GPF and how will we tell reviewers to judge the papers. Here are [[Develop_proposal_for_special_issue#Special_Issue_Review_Criteria | some notes]]<br />
#* Agree on the [[Develop_proposal_for_special_issue#Special_Issue_Editors | editors for the special issue]]<br />
#* Agree to a [[Develop_proposal_for_special_issue#Tentative_Timeline | tentative timeline]]<br />
# Review of the [[Plan_overall_timeline |timeline of tasks]]<br />
#* Is everyone clear on what needs to be done? What topics should we cover in upcoming telecons: GitHub, WINGS, PROV, Standard Names,...?<br />
# Review the [[Generate_GPFs | status of each paper]]<br />
# Plan the [[Plan_GPF_overview_article | joint overview article]]<br />
<br />
== Telecon Friday March 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Summary of the F2F meeting and the plans for the special issue<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results | document the provenance of the results]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Document the data analysis method as a workflow]]<br />
<br />
== Telecon Friday April 3, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Documenting the data analysis method as a workflow]]<br />
# Training about the next task: [[Make_software_accessible | Making software accessible]]<br />
<br />
== Telecon Friday April 17, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_accessible | Making software accessible]]<br />
# Training about the next task: [[Make_software_executable_by_others | Making software executable by others]]<br />
<br />
== Telecon Friday May 1, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_executable_by_others | Making software executable by others]]<br />
# Training about the next task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
#* Using [http://www.geosoft-earthcube.org/ GeoSoft]<br />
<br />
== Telecon Friday May 15, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
# Training about the next task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
<br />
== Face-To-Face Meeting at the EarthCube AHM, Wednesday May 27, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Announcement of the [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292333-5084/homepage/call_for_papers.htm Special Issue of AGU Earth and Space Science on Geoscience Papers of the Future]<br />
# The [http://www.geosoft-earthcube.org/gpf/ Geoscience Paper of the Future Initiative]<br />
# Report from everyone on the prior task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
# Report from everyone about timeline for remaining tasks to do on their papers and for writing the final draft for submission to the special issue<br />
<br />
== Telecon Friday June 12, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from the EarthCube poster and session presentations<br />
# The choice of submission for each article: [http://www.geosoft-earthcube.org/gpf/special-issue research article or technical report]<br />
#* [[Main_Page#Roster_of_GeoSoft_GPF_Papers | Tentative categories]]<br />
# A proposal for a format for the GPF aspects of the papers<br />
#* Publisher's [[Create_format_and_guidelines | required format]]<br />
# Plan [[Plan_timeline_for_all_submissions | timeline for each submission]]<br />
# Planning to get the joint paper written (by June 25?)<br />
#* [https://www.dropbox.com/s/ow8zbkuo4zdtiwv/GPF-Journey-v1.docx?dl=0 Raw outline and first draft are available here]<br />
<br />
== Training Catch Up Thursday June 18, 2015 ==<br />
<br />
* '''Special time: 8:30-10am PDT'''<br />
* Call-in details: <br />
** Use this [https://usc-isi.webex.com/usc-isi/j.php?MTID=ma65d086fa635822d66296ca45fe68f11 Webex link] or call 1-650-479-3208<br />
** Meeting number/access code: 807 035 115<br />
** Meeting password: special<br />
<br />
* Schedule:<br />
** 8:30-9 — Publishing and citing data<br />
** 9-9:30 — Publishing and citing software<br />
** 9:30-10 — Describing workflows and provenance of results<br />
<br />
== Telecon Friday June 19, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# A proposal for a [[Develop_GPF_Checklist | GPF checklist for authors]]<br />
# Review contributions and status of joint paper (See shared Dropbox folder)<br />
# Thoughts on the [http://www.geosoft-earthcube.org/gpf/ GPF Initiative: partners, sponsors, steering committee, etc.]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}<br />
<br />
== Telecon Friday August 7, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Review joint GPF paper (all)<br />
#* Add pointers about the recommendations (Cedric)<br />
#* Add an example?<br />
#* Any other comments to address?<br />
#* Any acknowledgements missing?<br />
#* When should we submit?<br />
# Status of everyone's papers<br />
#* Reminder of the [[Plan_timeline_for_all_submissions plans for mutual reviews]]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12169Develop GPF Checklist2015-07-21T22:05:56Z<p>Yolanda: Set PropertyValue: Progress = 100</p>
<hr />
<div>[[Category:Task]]<br />
<br />
[[File:Checklist.xlsx|Checklist spreadsheet]]<br />
<br />
[[File:Checklist.jpg|600px|GPF Checklist|border]]<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=100|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Make_data_accessible&diff=12154Make data accessible2015-06-24T23:31:36Z<p>Yolanda: Set PropertyValue: Progress = 90</p>
<hr />
<div>[[Category:Task]]<br />
<br />
== What This Task Involves ==<br />
<br />
The training session and training materials indicate how to:<br />
<br />
# Get a permanent unique identifier for your dataset in a public repository<br />
# Specify general (creator, license, version) and domain metadata (categories, tags)<br />
# Upload or specify a pointer to the dataset<br />
<br />
== Training Materials ==<br />
<br />
This training session will be held on February 20, 2015:<br />
<br />
* '''[https://www.dropbox.com/s/lekb1yl1r7ruzs8/GPF-MakingDataAccessible-20Feb2015.pdf?dl=0 Presentation]'''<br />
<br />
=== Suggested Readings ===<br />
<br />
* [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003542 "Ten Simple Rules for the Care and Feeding of Scientific Data."] Alyssa Goodman, Alberto Pepe , Alexander W. Blocker, Christine L. Borgman, Kyle Cranmer, Merce Crosas, Rosanne Di Stefano, Yolanda Gil, Paul Groth, Margaret Hedstrom, David W. Hogg, Vinay Kashyap, Ashish Mahabal, Aneta Siemiginowska, Aleksandra Slavkovic. PLOS Computational Biology, Published: April 24, 2014. DOI: 10.1371/journal.pcbi.1003542<br />
** ''A brief and practical introduction for how to publish and share data''<br />
<br />
* [https://peerj.com/preprints/697/ "Achieving human and machine accessibility of cited data in scholarly publications."] Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth Duerr, Laurel Haak, Melissa Haendel, Ivan Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark. PeerJ Preprint, Version of 11 February 2015.<br />
** ''A good description of the different kinds of permanent unique identifiers''<br />
<br />
* [http://www.dcc.ac.uk/resources/how-guides/cite-datasets "How to Cite Datasets and Link to Publications."] Alex Ball and Monica Duke. DCC How-to Guides. Edinburgh: Digital Curation Centre. Version of 20 June 2012.<br />
** ''A good overview of the elements in a data citation and how to handle granularity and versioning''<br />
<br />
* [http://commons.esipfed.org/node/308 "Data Citation Guidelines for Data Providers and Archives."] ESIP Technical Report. Version of 31 December 2011. doi:10.7269/P34F1NNJ<br />
** ''Provides many examples of alternative formats for citing a dataset''<br />
<br />
== What To Do ==<br />
<br />
We described many options in the training. Here is a sketch of the most common approach:<br />
# Create a public entry for your dataset with a permanent unique identifier. <br />
## Select a repository<br />
##* Option 1: Find a repository that your community uses<br />
##* Option 2: Go to figshare.com or zenodo.org (supported by CERN) or similarly free service, create an account. Figshare has 250MB file limits and 1GB private storage, but unlimited open storage. Zenodo allows files up to 2GB (with the potential for higher, if you talk to the site managers) and no current total storage limit.<br />
## Create an entry for each of your datasets<br />
### Specify the metadata <br />
### Include license information: choose from [http://www.creativecommons.org/licenses Creative Commons], for example CC-BY or CC0.<br />
### Upload or point to the data<br />
## The repository should give you a unique identifier (a DOI)<br />
# Create a data citation for each of your datasets<br />
#* Include: authors, date of publication, dataset name, repository name, permanent unique identifier, timestamp of retrieval.<br />
#* Specify the data citation in the repository entry for each dataset, so others can use it<br />
# Include the data citations in the GPF<br />
<br />
Some interesting cases that you may run into:<br />
* I have several related datasets in several files (e.g., each file has data for a time period)<br />
** Create a DOI for each file and a DOI for the whole set. If there are too many files (dozens or hundreds, it may be best to create a DOI for the whole set.<br />
* My data is in a public repository, it is not my data<br />
** Create a DOI for the slice of data that you use. Describe the data by specifying the query that you did to the repository and put a pointer to the repository, so others can also retrieve it.<br />
* My data is from a database<br />
** Ask for permission to publish the data that you extracted, and mention that you will give appropriate credit. Get an understanding of the appropriate license to use. Put the data in a file and publish it.<br />
* Some of the data that I use is from a colleague<br />
** Encourage them to make the data public in Figshare or any public repository, and offer to help. Explain to them how the license works. If they do not want to make the data public, that is ok. In that case, you should create an entry that does not have the data but at least describes it with all the metadata, which would include information about your colleague as the data creator and other information about how to get the data from them.<br />
* My data comes from many sources<br />
** Credit each source, create repository entries as needed<br />
** An option is to create in the paper a table with “microattributions” that summarize each data source<br />
* My data has many versions (e.g., sensors that collect more data over time)<br />
** Create an entry for either each slice or each snapshot<br />
* My datasets are very large<br />
** Leave the datasets in a repository that can contain data of that size, or put the data in a publicly accessible URL. Then get a PURL at [http://www.purl.org], and create an entry in Figshare or similar pointing to that PURL.<br />
<br />
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<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Expertise=Open_science|<br />
Owner=Yolanda_Gil|<br />
Participants=Erin_Robinson|<br />
Progress=90|<br />
StartDate=2015-02-21|<br />
TargetDate=2015-03-06|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Main_Page&diff=12149Main Page2015-06-19T07:04:42Z<p>Yolanda: /* Quick Links */</p>
<hr />
<div><br />
== Overview ==<br />
<br />
The GeoSoft '''Geoscience Paper of the Future (GPF)''' activity aims to demonstrate how papers will be published in the future, going beyond a PDF format and including software, datasets, and workflow all published in open and accessible ways that make the paper transparent, reproducible, and machine indexable. We refer to such a paper as a geoscience paper of the future, or GPF for short.<br />
<br />
The papers will be submitted to a [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292333-5084/homepage/call_for_papers.htm Special Issue on GeoScience Papers of the Future] of the [http://sites.agu.org AGU] [http://agupubs.onlinelibrary.wiley.com/agu/journal/10.1002/(ISSN)2333-5084/ Earth and Space Sciences] journal.<br />
<br />
We are extending the GeoSoft GPF activity to the broader community as a [http://www.geosoft-earthcube.org/gpf/ Geoscience Papers of the Future Initiative] to offers training and support to other potential authors of GPFs.<br />
<br />
== Quick Links ==<br />
* [[Hold_regular_telecons#Call_Time_and_Access_Codes | Telecon information]]<br />
** Next telecon and agenda: [[Hold_regular_telecons#Telecon_Friday_June_19.2C_2015 | Friday June 19]]<br />
* [http://www.geosoft-earthcube.org/gpf The public GPF site]<br />
* [[Document_GPF_activities | Task descriptions and training materials]]<br />
* [[Plan_overall_timeline | Overall timeline]]<br />
<br />
* [[Tips on How to Use Wikis]]<br />
<br />
== Roster of GeoSoft GPF Papers ==<br />
<br />
{| class="wikitable" style="color:black; background-color:#ffffcc;" cellpadding="10"<br />
|style="width: 10%" |'''Name'''<br />
|style="width: 20%" |'''Affiliation'''<br />
|style="width: 15%" |'''Research Area'''<br />
|style="width: 40%" |'''Tentative Title'''<br />
|style="width: 10%" |'''Submission Category'''<br />
|-<br />
| Cedric David<br />
| NASA Jet Propulsion Laboratory<br />
| Hydrology and river modeling<br />
| [[Document_GPF_activities_by_Cedric_David | Going beyond triple-checking, allowing for peace of mind in community model development]]<br />
| Technical Report<br />
|-<br />
| Ibrahim Demir et al<br />
| University of Iowa<br />
| Hydrology<br />
| [[Document_GPF_activities_by_Ibrahim_Demir | Analysis and Optimization of Hydrological Network Database Representation Methods for Fast Access and Query in Web-based System]]<br />
| Research Article<br />
|-<br />
| Wally Fulweiler et al<br />
| Boston University<br />
| Coastal marine ecosystems and biogeochemistry<br />
| [[Document_GPF_activities_by_Wally_Fulweiler | What can we learn from a decade of directly measured sediment di-nitrogen gas fluxes?]]<br />
| Technical Report<br />
|-<br />
| Bakinam Essawy, Jon Goodall et al <br />
| University of Virginia<br />
| Hydrology<br />
| [[Document_GPF_activities_by_Jon_Goodall | Post-processing Workflows Using Data Grids to Support Hydrologic Modeling]]<br />
| Research Article<br />
|-<br />
|Leif Karlstrom & Lay Kuan Loh<br />
| University of Oregon & Carnegie Mellon University<br />
| Volcanology and fluid mechanics<br />
| [[Document_GPF_activities_by_Leif_Karlstrom | Characterization of volcanic vent distributions using spectral clustering with eigenvector selection and entropy ranking]]<br />
| Research Article<br />
|-<br />
| Kyo Lee et al<br />
| NASA Jet Propulsion Laboratory<br />
| Regional climate model evaluation<br />
| [[Document_GPF_activities_by_Kyo_Lee | Evaluation of simulated temperature, precipitation, cloud fraction and insolation over the conterminous United States using Regional Climate Model Evaluation System]]<br />
| Research Article<br />
|-<br />
| Heath Mills et al<br />
| University of Houston Clear Lake<br />
| Marine geomicrobiology<br />
| [[Document_GPF_activities_by_Heath_Mills | Iron and Sulfur Cycling Biogeography Using Advanced Geochemical and Molecular Analyses]]<br />
| Research Article<br />
|-<br />
| Ji-Hyun Oh<br />
| NASA Jet Propulsion Laboratory<br />
| Tropical meteorology<br />
| [[Document_GPF_activities_by_Ji-Hyun_Oh | Tools for computing momentum budget for the westerly wind event associated with the Madden-Julian Oscillation]]<br />
| Technical Report<br />
|-<br />
| Suzanne Pierce et al<br />
| Texas Advanced Computing Center, The University of Texas Austin<br />
| Hydrogeology, decision support<br />
| [[Document_GPF_activities_by_Suzanne_Pierce | MCSDSS: An accessible platform and application to enable data fusion and interactive visualization for the geosciences]]<br />
| Research Article<br />
|-<br />
| Allen Pope<br />
| NSDIC<br />
| Glaciology, remote sensing<br />
| [[Document_GPF_activities_by_Allen_Pope | Reproducibly Estimating and Evaluating Supraglacial Lake Depth with Landsat 8 and other Multispectral Sensors]]<br />
| Technical Report<br />
|-<br />
| Mimi Tzeng et al<br />
| Dauphin Island Sea Lab<br />
| Physical Oceanography<br />
| [[Document_GPF_activities_by_Mimi_Tzeng | Fisheries Oceanography of Coastal Alabama (FOCAL): A Subset of a Time-Series of Hydrographic and Current Data from a Permanent Moored Station Outside Mobile Bay (27 Jan to 18 May 2011)]]<br />
| Technical Report<br />
|-<br />
| Sandra Villamizar et al<br />
| University of California Merced<br />
| River ecohydrology<br />
| [[Document_GPF_activities_by_Sandra_Villamizar | Producing long-term series of whole-stream metabolism using readily available data]]<br />
| Technical Report<br />
|-<br />
| Xuan Yu et al<br />
| University of Delaware<br />
| Hydrology<br />
| [[Document_GPF_activities_by_Xuan_Yu | Learn integrated modeling of coupled surface and subsurface hydrology from scratch]]<br />
| Technical Report<br />
|}<br />
<br />
== Acknowledgments ==<br />
<br />
This activity is organized by the [http://www.geosoft-earthcube.org GeoSoft project] as part of the [http://www.earthcube.org EarthCube initiative] of the US National Science Foundation with awards ICER-1343800 and ICER-1440323.</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=File:Checklist.xlsx&diff=12148File:Checklist.xlsx2015-06-19T06:38:05Z<p>Yolanda: </p>
<hr />
<div></div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12147Develop GPF Checklist2015-06-19T06:37:37Z<p>Yolanda: </p>
<hr />
<div>[[Category:Task]]<br />
<br />
[[File:Checklist.xlsx|Checklist spreadsheet]]<br />
<br />
[[File:Checklist.jpg|600px|GPF Checklist|border]]<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12146Develop GPF Checklist2015-06-19T06:36:55Z<p>Yolanda: </p>
<hr />
<div>[[Category:Task]]<br />
<br />
[[File:Checklist.xslx|Checklist spreadsheet]]<br />
<br />
[[File:Checklist.jpg|600px|GPF Checklist|border]]<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12145Develop GPF Checklist2015-06-19T06:35:57Z<p>Yolanda: </p>
<hr />
<div>[[Category:Task]]<br />
<br />
[[File:Checklist.xslt|Checklist spreadsheet]]<br />
<br />
[[File:Checklist.jpg|600px|GPF Checklist|border]]<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Collect_submissions&diff=12144Collect submissions2015-06-19T06:34:19Z<p>Yolanda: </p>
<hr />
<div>[[Category:Task]]<br />
<br />
Article drafts are being uploaded to a privately shared Dropbox folder.<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
Progress=10|<br />
StartDate=2015-06-03|<br />
SubTask=Create_format_and_guidelines|<br />
SubTask=Plan_timeline_for_all_submissions|<br />
TargetDate=2015-09-29|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Hold_regular_telecons&diff=12143Hold regular telecons2015-06-19T06:33:52Z<p>Yolanda: /* Telecon Friday June 19, 2015 */</p>
<hr />
<div>[[Category:Task]]<br />
<br />
== Call Time and Access Codes == <br />
<br />
The new regular call time is Fridays at 12:30-2PM PDT every other week starting June 12. <br />
To join the meeting:<br />
<br />
# Online: <br />
#* [https://usc-isi.webex.com/usc-isi Join WebEx meeting]<br />
#* Select "GeoSoft GPF"<br />
#* Meeting number: 808 758 523<br />
#* Meeting password: geo123<br />
<br />
# By phone<br />
#* Call 1-650-479-3208<br />
#* Access code: 808 758 523<br />
<br />
The old call time is Fridays at 2-3:30PM PDT every other week in Spring 2015 starting February 6. The time was selected based on a [http://doodle.com/arp345are8nsgbe9#table doodle poll].<br />
<br />
== Telecon Friday February 6, 2015 ==<br />
<br />
To prepare for the call, you should select a paper that you would like to use for the work. It could be a paper of yours (published or in preparation), or a seminal paper by someone else in your field that you would like to reproduce/understand/make available to the community in a better format. You can form a team to work on the same paper if you prefer.<br />
<br />
=== Agenda ===<br />
<br />
# What is a GPF and what it would entail<br />
#* [[Discuss_what_we_will_consider_a_GPF | Discussion: What is a GPF]]<br />
# Planning the GPF activities for the next 4-5 months<br />
#* [[Plan_overall_timeline | Review proposed timeline]]<br />
# Questions from everyone about their particular papers<br />
# How the web site works<br />
#* Learn the basics of how wikis work: [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the detailed [//meta.wikimedia.org/wiki/Help:Contents User's Guide].<br />
#* The left side is for navigating different tasks. You won't need to create tasks yourself, but if you are curious about how to do that see [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here].<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/1Ps-mGDZ1d0KB1QWcYPkUIRw7yfVtHk9FXyskLVD9fdE/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday February 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Training on how to use this wiki, here is [[Main_Page#Using_this_Wiki | an overview]]<br />
# Report from everyone on the prior task: [[Ensure_software_is_usable | ensuring software is usable]]<br />
# Training about the next task: [[Make_data_accessible | making data accessible]], here are the [https://www.dropbox.com/s/lekb1yl1r7ruzs8/GPF-MakingDataAccessible-20Feb2015.pdf?dl=0 slides for the presentation], further readings are provided [[Make_data_accessible | here]]<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/14CCyafFNaP8uYCF_zruuD-ieFPdLatohoyhkuYw040U/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday March 6, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_data_accessible | making data accessible]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results | document the provenance of the results]], here are the [https://www.dropbox.com/s/9bumgm4t6on1bis/GPF-Provenance-6Mar2015.pdf?dl=0 slides for the presentation]<br />
# Q/A about F2F meeting<br />
<br />
== Face-to-Face Meeting March 13, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Writing a proposal for the special issue that we can bring up to the publisher/editors. Here is an [[Develop_proposal_for_special_issue | outline/draft of what it should contain]]<br />
#* Write an introduction, here are [[Develop_proposal_for_special_issue#Background:_Why_a_Special_Issue_on_Geoscience_Papers_of_the_Future.3F | some notes]]<br />
#* Include a brief description of each paper, here are [[Develop_proposal_for_special_issue#Papers_to_be_included | some notes]]<br />
#* Discuss the criteria to consider a submission for this special issue, i.e., what is a GPF and how will we tell reviewers to judge the papers. Here are [[Develop_proposal_for_special_issue#Special_Issue_Review_Criteria | some notes]]<br />
#* Agree on the [[Develop_proposal_for_special_issue#Special_Issue_Editors | editors for the special issue]]<br />
#* Agree to a [[Develop_proposal_for_special_issue#Tentative_Timeline | tentative timeline]]<br />
# Review of the [[Plan_overall_timeline |timeline of tasks]]<br />
#* Is everyone clear on what needs to be done? What topics should we cover in upcoming telecons: GitHub, WINGS, PROV, Standard Names,...?<br />
# Review the [[Generate_GPFs | status of each paper]]<br />
# Plan the [[Plan_GPF_overview_article | joint overview article]]<br />
<br />
== Telecon Friday March 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Summary of the F2F meeting and the plans for the special issue<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results | document the provenance of the results]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Document the data analysis method as a workflow]]<br />
<br />
== Telecon Friday April 3, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Documenting the data analysis method as a workflow]]<br />
# Training about the next task: [[Make_software_accessible | Making software accessible]]<br />
<br />
== Telecon Friday April 17, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_accessible | Making software accessible]]<br />
# Training about the next task: [[Make_software_executable_by_others | Making software executable by others]]<br />
<br />
== Telecon Friday May 1, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_executable_by_others | Making software executable by others]]<br />
# Training about the next task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
#* Using [http://www.geosoft-earthcube.org/ GeoSoft]<br />
<br />
== Telecon Friday May 15, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
# Training about the next task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
<br />
== Face-To-Face Meeting at the EarthCube AHM, Wednesday May 27, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Announcement of the [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292333-5084/homepage/call_for_papers.htm Special Issue of AGU Earth and Space Science on Geoscience Papers of the Future]<br />
# The [http://www.geosoft-earthcube.org/gpf/ Geoscience Paper of the Future Initiative]<br />
# Report from everyone on the prior task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
# Report from everyone about timeline for remaining tasks to do on their papers and for writing the final draft for submission to the special issue<br />
<br />
== Telecon Friday June 12, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from the EarthCube poster and session presentations<br />
# The choice of submission for each article: [http://www.geosoft-earthcube.org/gpf/special-issue research article or technical report]<br />
#* [[Main_Page#Roster_of_GeoSoft_GPF_Papers | Tentative categories]]<br />
# A proposal for a format for the GPF aspects of the papers<br />
#* Publisher's [[Create_format_and_guidelines | required format]]<br />
# Plan [[Plan_timeline_for_all_submissions | timeline for each submission]]<br />
# Planning to get the joint paper written (by June 25?)<br />
#* [https://www.dropbox.com/s/ow8zbkuo4zdtiwv/GPF-Journey-v1.docx?dl=0 Raw outline and first draft are available here]<br />
<br />
== Training Catch Up Thursday June 18, 2015 ==<br />
<br />
* '''Special time: 8:30-10am PDT'''<br />
* Call-in details: <br />
** Use this [https://usc-isi.webex.com/usc-isi/j.php?MTID=ma65d086fa635822d66296ca45fe68f11 Webex link] or call 1-650-479-3208<br />
** Meeting number/access code: 807 035 115<br />
** Meeting password: special<br />
<br />
* Schedule:<br />
** 8:30-9 — Publishing and citing data<br />
** 9-9:30 — Publishing and citing software<br />
** 9:30-10 — Describing workflows and provenance of results<br />
<br />
== Telecon Friday June 19, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# A proposal for a [[Develop_GPF_Checklist | GPF checklist for authors]]<br />
# Review contributions and status of joint paper (See shared Dropbox folder)<br />
# Thoughts on the [http://www.geosoft-earthcube.org/gpf/ GPF Initiative: partners, sponsors, steering committee, etc.]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Hold_regular_telecons&diff=12142Hold regular telecons2015-06-19T06:33:39Z<p>Yolanda: /* Telecon Friday June 19, 2015 */</p>
<hr />
<div>[[Category:Task]]<br />
<br />
== Call Time and Access Codes == <br />
<br />
The new regular call time is Fridays at 12:30-2PM PDT every other week starting June 12. <br />
To join the meeting:<br />
<br />
# Online: <br />
#* [https://usc-isi.webex.com/usc-isi Join WebEx meeting]<br />
#* Select "GeoSoft GPF"<br />
#* Meeting number: 808 758 523<br />
#* Meeting password: geo123<br />
<br />
# By phone<br />
#* Call 1-650-479-3208<br />
#* Access code: 808 758 523<br />
<br />
The old call time is Fridays at 2-3:30PM PDT every other week in Spring 2015 starting February 6. The time was selected based on a [http://doodle.com/arp345are8nsgbe9#table doodle poll].<br />
<br />
== Telecon Friday February 6, 2015 ==<br />
<br />
To prepare for the call, you should select a paper that you would like to use for the work. It could be a paper of yours (published or in preparation), or a seminal paper by someone else in your field that you would like to reproduce/understand/make available to the community in a better format. You can form a team to work on the same paper if you prefer.<br />
<br />
=== Agenda ===<br />
<br />
# What is a GPF and what it would entail<br />
#* [[Discuss_what_we_will_consider_a_GPF | Discussion: What is a GPF]]<br />
# Planning the GPF activities for the next 4-5 months<br />
#* [[Plan_overall_timeline | Review proposed timeline]]<br />
# Questions from everyone about their particular papers<br />
# How the web site works<br />
#* Learn the basics of how wikis work: [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the detailed [//meta.wikimedia.org/wiki/Help:Contents User's Guide].<br />
#* The left side is for navigating different tasks. You won't need to create tasks yourself, but if you are curious about how to do that see [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here].<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/1Ps-mGDZ1d0KB1QWcYPkUIRw7yfVtHk9FXyskLVD9fdE/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday February 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Training on how to use this wiki, here is [[Main_Page#Using_this_Wiki | an overview]]<br />
# Report from everyone on the prior task: [[Ensure_software_is_usable | ensuring software is usable]]<br />
# Training about the next task: [[Make_data_accessible | making data accessible]], here are the [https://www.dropbox.com/s/lekb1yl1r7ruzs8/GPF-MakingDataAccessible-20Feb2015.pdf?dl=0 slides for the presentation], further readings are provided [[Make_data_accessible | here]]<br />
<br />
=== Meeting Notes ===<br />
<br />
Everyone can help take notes during the meeting by editing [https://docs.google.com/document/d/14CCyafFNaP8uYCF_zruuD-ieFPdLatohoyhkuYw040U/edit?usp=sharing this shared document.]<br />
<br />
== Telecon Friday March 6, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_data_accessible | making data accessible]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results | document the provenance of the results]], here are the [https://www.dropbox.com/s/9bumgm4t6on1bis/GPF-Provenance-6Mar2015.pdf?dl=0 slides for the presentation]<br />
# Q/A about F2F meeting<br />
<br />
== Face-to-Face Meeting March 13, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Writing a proposal for the special issue that we can bring up to the publisher/editors. Here is an [[Develop_proposal_for_special_issue | outline/draft of what it should contain]]<br />
#* Write an introduction, here are [[Develop_proposal_for_special_issue#Background:_Why_a_Special_Issue_on_Geoscience_Papers_of_the_Future.3F | some notes]]<br />
#* Include a brief description of each paper, here are [[Develop_proposal_for_special_issue#Papers_to_be_included | some notes]]<br />
#* Discuss the criteria to consider a submission for this special issue, i.e., what is a GPF and how will we tell reviewers to judge the papers. Here are [[Develop_proposal_for_special_issue#Special_Issue_Review_Criteria | some notes]]<br />
#* Agree on the [[Develop_proposal_for_special_issue#Special_Issue_Editors | editors for the special issue]]<br />
#* Agree to a [[Develop_proposal_for_special_issue#Tentative_Timeline | tentative timeline]]<br />
# Review of the [[Plan_overall_timeline |timeline of tasks]]<br />
#* Is everyone clear on what needs to be done? What topics should we cover in upcoming telecons: GitHub, WINGS, PROV, Standard Names,...?<br />
# Review the [[Generate_GPFs | status of each paper]]<br />
# Plan the [[Plan_GPF_overview_article | joint overview article]]<br />
<br />
== Telecon Friday March 20, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Summary of the F2F meeting and the plans for the special issue<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results | document the provenance of the results]]<br />
# Training about the next task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Document the data analysis method as a workflow]]<br />
<br />
== Telecon Friday April 3, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_the_provenance_of_the_results#Using_the_WINGS_Workflow_System_to_Document_Provenance | Documenting the data analysis method as a workflow]]<br />
# Training about the next task: [[Make_software_accessible | Making software accessible]]<br />
<br />
== Telecon Friday April 17, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_accessible | Making software accessible]]<br />
# Training about the next task: [[Make_software_executable_by_others | Making software executable by others]]<br />
<br />
== Telecon Friday May 1, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Make_software_executable_by_others | Making software executable by others]]<br />
# Training about the next task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
#* Using [http://www.geosoft-earthcube.org/ GeoSoft]<br />
<br />
== Telecon Friday May 15, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from everyone on the prior task: [[Document_software_by_specifying_metadata | Documenting software by specifying metadata]]<br />
# Training about the next task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
<br />
== Face-To-Face Meeting at the EarthCube AHM, Wednesday May 27, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Announcement of the [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292333-5084/homepage/call_for_papers.htm Special Issue of AGU Earth and Space Science on Geoscience Papers of the Future]<br />
# The [http://www.geosoft-earthcube.org/gpf/ Geoscience Paper of the Future Initiative]<br />
# Report from everyone on the prior task: [[Document_domain_characteristics | Documenting domain characteristics of software]]<br />
# Report from everyone about timeline for remaining tasks to do on their papers and for writing the final draft for submission to the special issue<br />
<br />
== Telecon Friday June 12, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# Report from the EarthCube poster and session presentations<br />
# The choice of submission for each article: [http://www.geosoft-earthcube.org/gpf/special-issue research article or technical report]<br />
#* [[Main_Page#Roster_of_GeoSoft_GPF_Papers | Tentative categories]]<br />
# A proposal for a format for the GPF aspects of the papers<br />
#* Publisher's [[Create_format_and_guidelines | required format]]<br />
# Plan [[Plan_timeline_for_all_submissions | timeline for each submission]]<br />
# Planning to get the joint paper written (by June 25?)<br />
#* [https://www.dropbox.com/s/ow8zbkuo4zdtiwv/GPF-Journey-v1.docx?dl=0 Raw outline and first draft are available here]<br />
<br />
== Training Catch Up Thursday June 18, 2015 ==<br />
<br />
* '''Special time: 8:30-10am PDT'''<br />
* Call-in details: <br />
** Use this [https://usc-isi.webex.com/usc-isi/j.php?MTID=ma65d086fa635822d66296ca45fe68f11 Webex link] or call 1-650-479-3208<br />
** Meeting number/access code: 807 035 115<br />
** Meeting password: special<br />
<br />
* Schedule:<br />
** 8:30-9 — Publishing and citing data<br />
** 9-9:30 — Publishing and citing software<br />
** 9:30-10 — Describing workflows and provenance of results<br />
<br />
== Telecon Friday June 19, 2015 ==<br />
<br />
=== Agenda ===<br />
<br />
# A proposal for a [[Develop_GPF_Checklist | GPF checklist for authors]]<br />
# Review contributions and status of joint paper (Shared Dropbox folder)<br />
# Thoughts on the [http://www.geosoft-earthcube.org/gpf/ GPF Initiative: partners, sponsors, steering committee, etc.]<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-01-26|<br />
TargetDate=2015-06-30|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=File:Checklist.jpg&diff=12141File:Checklist.jpg2015-06-19T06:31:48Z<p>Yolanda: </p>
<hr />
<div></div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12140Develop GPF Checklist2015-06-19T06:31:09Z<p>Yolanda: </p>
<hr />
<div>[[Category:Task]]<br />
<br />
[[File:Checklist.jpg|600px|GPF Checklist|border]]<br />
<br />
<!-- Add any wiki Text above this Line --><br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12139Develop GPF Checklist2015-06-19T06:26:36Z<p>Yolanda: Set PropertyValue: Owner = Yolanda Gil</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12138Develop GPF Checklist2015-06-19T06:26:28Z<p>Yolanda: Set PropertyValue: TargetDate = 2015-06-25</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
TargetDate=2015-06-25|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12137Develop GPF Checklist2015-06-19T06:26:23Z<p>Yolanda: Set PropertyValue: StartDate = 2015-06-12</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Progress=80|<br />
StartDate=2015-06-12|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12136Develop GPF Checklist2015-06-19T06:26:18Z<p>Yolanda: Set PropertyValue: StartDate = 2015-06-17</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Progress=80|<br />
StartDate=2015-06-17|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12135Develop GPF Checklist2015-06-19T06:26:13Z<p>Yolanda: Set PropertyValue: Progress = 80</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Progress=80|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12134Develop GPF Checklist2015-06-19T06:26:08Z<p>Yolanda: Set PropertyValue: Type = low</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Collect_submissions&diff=12133Collect submissions2015-06-19T06:25:58Z<p>Yolanda: Set PropertyValue: Progress = 10</p>
<hr />
<div>[[Category:Task]]<br />
<br />
Article drafts are being uploaded to a privately shared Google Drive.<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
Progress=10|<br />
StartDate=2015-06-03|<br />
SubTask=Create_format_and_guidelines|<br />
SubTask=Plan_timeline_for_all_submissions|<br />
TargetDate=2015-09-29|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12132Create format and guidelines2015-06-19T06:25:25Z<p>Yolanda: </p>
<hr />
<div><br />
Detailed [http://earthandspacescience-submit.agu.org/cgi-bin/main.plex?form_type=display_auth_instructions instructions for authors] and [http://publications.agu.org/author-resource-center/author-guide/publication-fees/ publication fees] can be found in the journal web site.<br />
<br />
All expenses for the articles will be covered by the project.<br />
<br />
== Submissions ==<br />
Submissions will be in two categories:<br />
<br />
* Research articles (up to 25 AGU publication units) for research with a clear novel contribution.<br />
* Technical reports (up to 13 AGU publication units) for those studies focusing on various aspects of making research reproducible; either based on published studies, or emphasizing the full description of their methods. <br />
<br />
where a publication unit is either 500 words of text, or a table, or a figure.<br />
<br />
== Format ==<br />
<br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Format requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12131Create format and guidelines2015-06-19T06:25:08Z<p>Yolanda: </p>
<hr />
<div><br />
Detailed [http://earthandspacescience-submit.agu.org/cgi-bin/main.plex?form_type=display_auth_instructions instructions for authors] and [http://publications.agu.org/author-resource-center/author-guide/publication-fees/ publication fees] can be found in the journal web site.<br />
<br />
'''All expenses for the articles will be covered by the GeoSoft project.'''<br />
<br />
== Submissions ==<br />
Submissions will be in two categories:<br />
<br />
* Research articles (up to 25 AGU publication units) for research with a clear novel contribution.<br />
* Technical reports (up to 13 AGU publication units) for those studies focusing on various aspects of making research reproducible; either based on published studies, or emphasizing the full description of their methods. <br />
<br />
where a publication unit is either 500 words of text, or a table, or a figure.<br />
<br />
== Format ==<br />
<br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Format requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Collect_submissions&diff=12130Collect submissions2015-06-19T06:24:43Z<p>Yolanda: </p>
<hr />
<div>[[Category:Task]]<br />
<br />
Article drafts are being uploaded to a privately shared Google Drive.<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
Progress=0|<br />
StartDate=2015-06-03|<br />
SubTask=Create_format_and_guidelines|<br />
SubTask=Plan_timeline_for_all_submissions|<br />
TargetDate=2015-09-29|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Develop_GPF_Checklist&diff=12128Develop GPF Checklist2015-06-19T06:23:42Z<p>Yolanda: Creating new page with Category: Task</p>
<hr />
<div>[[Category:Task]]</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_special_issue&diff=12129Plan special issue2015-06-19T06:23:42Z<p>Yolanda: Added PropertyValue: SubTask = Develop GPF Checklist</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Expertise=Open_science|<br />
Owner=Yolanda_Gil|<br />
Participants=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
StartDate=2015-03-10|<br />
SubTask=Develop_GPF_Checklist|<br />
SubTask=Develop_proposal_for_special_issue|<br />
SubTask=Approach_publisher_and_editors|<br />
SubTask=Collect_submissions|<br />
TargetDate=2015-09-30|<br />
Type=Medium}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12127Create format and guidelines2015-06-19T06:23:09Z<p>Yolanda: </p>
<hr />
<div><br />
Detailed [http://earthandspacescience-submit.agu.org/cgi-bin/main.plex?form_type=display_auth_instructions instructions for authors] and [http://publications.agu.org/author-resource-center/author-guide/publication-fees/ publication fees] can be found in the journal web site.<br />
<br />
== Submissions ==<br />
Submissions will be in two categories:<br />
<br />
* Research articles (up to 25 AGU publication units) for research with a clear novel contribution.<br />
* Technical reports (up to 13 AGU publication units) for those studies focusing on various aspects of making research reproducible; either based on published studies, or emphasizing the full description of their methods. <br />
<br />
where a publication unit is either 500 words of text, or a table, or a figure.<br />
<br />
== Format ==<br />
<br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Format requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12126Create format and guidelines2015-06-19T06:22:43Z<p>Yolanda: </p>
<hr />
<div>== Submissions ==<br />
Submissions will be in two categories:<br />
<br />
* Research articles (up to 25 AGU publication units) for research with a clear novel contribution.<br />
* Technical reports (up to 13 AGU publication units) for those studies focusing on various aspects of making research reproducible; either based on published studies, or emphasizing the full description of their methods. <br />
<br />
where a publication unit is either 500 words of text, or a table, or a figure.<br />
<br />
Detailed [http://earthandspacescience-submit.agu.org/cgi-bin/main.plex?form_type=display_auth_instructions instructions for authors] and [http://publications.agu.org/author-resource-center/author-guide/publication-fees/ publication fees] can be found in the journal web site.<br />
<br />
== Format ==<br />
<br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Format requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12125Create format and guidelines2015-06-19T06:22:20Z<p>Yolanda: </p>
<hr />
<div>== Submissions ==<br />
Submissions will be in two categories:<br />
<br />
* Research articles (up to 25 AGU publication units) for research with a clear novel contribution.<br />
* Technical reports (up to 13 AGU publication units) for those studies focusing on various aspects of making research reproducible; either based on published studies, or emphasizing the full description of their methods. <br />
<br />
where a publication unit is either 500 words of text, or a table, or a figure.<br />
<br />
Detailed [http://earthandspacescience-submit.agu.org/cgi-bin/main.plex?form_type=display_auth_instructions instructions for authors] and [http://publications.agu.org/author-resource-center/author-guide/publication-fees/ publication fees] can be found in the journal web site.<br />
<br />
== Format ==<br />
<br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Format requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Generate_GPFs&diff=12124Generate GPFs2015-06-19T06:19:18Z<p>Yolanda: Set PropertyValue: TargetDate = 2015-09-29</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Expertise=Geosciences|<br />
Expertise=Open_science|<br />
Owner=Yolanda_Gil|<br />
Participants=Cedric_David|<br />
Participants=Ibrahim_Demir|<br />
Participants=Heath_Mills|<br />
Participants=Suzanne_Pierce|<br />
Participants=Mimi_Tzeng|<br />
Participants=Sandra_Villamizar|<br />
Participants=Xuan_Yu|<br />
Participants=Wally_Fulweiler|<br />
Participants=Leif_Karlstrom|<br />
Participants=Jordan_Read|<br />
Participants=Kim_Miller|<br />
Participants=Ji-Hyun_Oh|<br />
Participants=Allen_Pope|<br />
Participants=Kyo_Lee|<br />
StartDate=2015-02-01|<br />
SubTask=Document_GPF_activities_by_Cedric_David|<br />
SubTask=Document_GPF_activities_by_Ibrahim_Demir|<br />
SubTask=Document_GPF_activities_by_Heath_Mills|<br />
SubTask=Document_GPF_activities_by_Suzanne_Pierce|<br />
SubTask=Document_GPF_activities_by_Mimi_Tzeng|<br />
SubTask=Document_GPF_activities_by_Sandra_Villamizar|<br />
SubTask=Document_GPF_activities_by_Xuan_Yu|<br />
SubTask=Document_GPF_activities_by_Wally_Fulweiler|<br />
SubTask=Document_GPF_activities_by_Leif_Karlstrom|<br />
SubTask=Document_GPF_activities_by_Ji-Hyun_Oh|<br />
SubTask=Document_GPF_activities_by_Allen_Pope|<br />
SubTask=Document_GPF_activities_by_Kyo_Lee|<br />
SubTask=Document_GPF_activities_by_Jon_Goodall|<br />
TargetDate=2015-09-29|<br />
Type=Medium}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_special_issue&diff=12123Plan special issue2015-06-19T06:18:53Z<p>Yolanda: Deleted PropertyValue: SubTask = Develop_GPF_checklist</p>
<hr />
<div>[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Expertise=Open_science|<br />
Owner=Yolanda_Gil|<br />
Participants=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
StartDate=2015-03-10|<br />
SubTask=Develop_proposal_for_special_issue|<br />
SubTask=Approach_publisher_and_editors|<br />
SubTask=Collect_submissions|<br />
TargetDate=2015-09-30|<br />
Type=Medium}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12122Create format and guidelines2015-06-19T06:18:22Z<p>Yolanda: Set PropertyValue: Progress = 80</p>
<hr />
<div><br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=80|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12121Create format and guidelines2015-06-19T06:18:15Z<p>Yolanda: Set PropertyValue: TargetDate = 2015-06-19</p>
<hr />
<div><br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
<br />
<br />
[[Category:Task]]<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=20|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-19|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_timeline_for_all_submissions&diff=12120Plan timeline for all submissions2015-06-19T06:18:02Z<p>Yolanda: Set PropertyValue: Progress = 90</p>
<hr />
<div>[[Category:Task]]<br />
<br />
'''[[Main_Page#Roster_of_GeoSoft_GPF_Papers | Details about the papers are here]]'''<br />
<br />
Submissions will be staggered, probably with two target dates:<br />
<br />
* Submissions targeting July 10: David, Fulweiler, Pope, Tzeng, Yu, and the joint paper.<br />
* Submissions targeting August 31: Goodall/Essawy, Lee, Mills, Oh, Villamizar, and probably also Karlstrom and Pierce.<br />
<br />
Target submission dates and peer review assignments are below. In bold are target dates confirmed by authors (please update as needed). Check with your peer reviewer a few days before you finish your draft to give them some warning that your paper is coming.<br />
<br />
{| class="wikitable" style="color:black; background-color:#ffffcc;" cellpadding="10"<br />
|style="width: 20%" |'''Name'''<br />
|style="width: 20%" |'''First Full Draft'''<br />
|style="width: 20%" |'''Peer Reviewer'''<br />
|style="width: 20%" |'''Peer Review Completed'''<br />
|style="width: 20%" |'''Final Draft'''<br />
|-<br />
| Cedric David<br />
| June 20<br />
| Villamizar<br />
| June 25<br />
| '''June 30'''<br />
|-<br />
| Demir et al<br />
| July 1<br />
| Yu<br />
| June 8<br />
| '''June 15'''<br />
|-<br />
| Wally Fulweiler et al<br />
| June 20<br />
| Mills<br />
| June 25<br />
| '''June 30'''<br />
|-<br />
| Bakinam Essawy, Jon Goodall et al <br />
| July 20<br />
| Pierce<br />
| July 25<br />
| '''July 31'''<br />
|-<br />
|Leif Karlstrom & Lay Kuan Loh<br />
| June 20<br />
| Pope<br />
| June 25<br />
| '''June 30'''<br />
|-<br />
| Kyo Lee et al<br />
| Aug 20<br />
| Oh<br />
| Aug 25<br />
| '''Aug 31'''<br />
|-<br />
| Heath Mills et al<br />
| Aug 20<br />
| Fulweiler<br />
| Aug 25<br />
| '''Aug 31'''<br />
|-<br />
| Ji-Hyun Oh<br />
| Aug 20<br />
| Lee<br />
| Aug 25<br />
| '''Aug 31'''<br />
|-<br />
| Suzanne Pierce et al<br />
| June 20<br />
| Essawy<br />
| June 25<br />
| June 30<br />
|-<br />
| Allen Pope<br />
| June 23<br />
| Karlstrom<br />
| June 27<br />
| '''July 3'''<br />
|-<br />
| Mimi Tzeng et al<br />
| July 5<br />
| Oh<br />
| July 10<br />
| '''July 15'''<br />
|-<br />
| Sandra Villamizar et al<br />
| '''June 30'''<br />
| David<br />
| '''July 15'''<br />
| '''July 31'''<br />
|-<br />
| Xuan Yu et al<br />
| June 25<br />
| Demir<br />
| June 30<br />
| '''July 5'''<br />
|}<br />
<br />
<br />
<!-- Add any wiki Text above this Line --><br />
<!-- Do NOT Edit below this Line --><br />
{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=90|<br />
StartDate=2015-06-05|<br />
TargetDate=2015-07-31|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_timeline_for_all_submissions&diff=12119Plan timeline for all submissions2015-06-19T06:17:54Z<p>Yolanda: Set PropertyValue: TargetDate = 2015-07-31</p>
<hr />
<div>[[Category:Task]]<br />
<br />
'''[[Main_Page#Roster_of_GeoSoft_GPF_Papers | Details about the papers are here]]'''<br />
<br />
Submissions will be staggered, probably with two target dates:<br />
<br />
* Submissions targeting July 10: David, Fulweiler, Pope, Tzeng, Yu, and the joint paper.<br />
* Submissions targeting August 31: Goodall/Essawy, Lee, Mills, Oh, Villamizar, and probably also Karlstrom and Pierce.<br />
<br />
Target submission dates and peer review assignments are below. In bold are target dates confirmed by authors (please update as needed). Check with your peer reviewer a few days before you finish your draft to give them some warning that your paper is coming.<br />
<br />
{| class="wikitable" style="color:black; background-color:#ffffcc;" cellpadding="10"<br />
|style="width: 20%" |'''Name'''<br />
|style="width: 20%" |'''First Full Draft'''<br />
|style="width: 20%" |'''Peer Reviewer'''<br />
|style="width: 20%" |'''Peer Review Completed'''<br />
|style="width: 20%" |'''Final Draft'''<br />
|-<br />
| Cedric David<br />
| June 20<br />
| Villamizar<br />
| June 25<br />
| '''June 30'''<br />
|-<br />
| Demir et al<br />
| July 1<br />
| Yu<br />
| June 8<br />
| '''June 15'''<br />
|-<br />
| Wally Fulweiler et al<br />
| June 20<br />
| Mills<br />
| June 25<br />
| '''June 30'''<br />
|-<br />
| Bakinam Essawy, Jon Goodall et al <br />
| July 20<br />
| Pierce<br />
| July 25<br />
| '''July 31'''<br />
|-<br />
|Leif Karlstrom & Lay Kuan Loh<br />
| June 20<br />
| Pope<br />
| June 25<br />
| '''June 30'''<br />
|-<br />
| Kyo Lee et al<br />
| Aug 20<br />
| Oh<br />
| Aug 25<br />
| '''Aug 31'''<br />
|-<br />
| Heath Mills et al<br />
| Aug 20<br />
| Fulweiler<br />
| Aug 25<br />
| '''Aug 31'''<br />
|-<br />
| Ji-Hyun Oh<br />
| Aug 20<br />
| Lee<br />
| Aug 25<br />
| '''Aug 31'''<br />
|-<br />
| Suzanne Pierce et al<br />
| June 20<br />
| Essawy<br />
| June 25<br />
| June 30<br />
|-<br />
| Allen Pope<br />
| June 23<br />
| Karlstrom<br />
| June 27<br />
| '''July 3'''<br />
|-<br />
| Mimi Tzeng et al<br />
| July 5<br />
| Oh<br />
| July 10<br />
| '''July 15'''<br />
|-<br />
| Sandra Villamizar et al<br />
| '''June 30'''<br />
| David<br />
| '''July 15'''<br />
| '''July 31'''<br />
|-<br />
| Xuan Yu et al<br />
| June 25<br />
| Demir<br />
| June 30<br />
| '''July 5'''<br />
|}<br />
<br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=5|<br />
StartDate=2015-06-05|<br />
TargetDate=2015-07-31|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Collect_submissions&diff=12118Collect submissions2015-06-19T06:17:34Z<p>Yolanda: Set PropertyValue: StartDate = 2015-06-03</p>
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<div>[[Category:Task]]<br />
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'''All expenses for the articles will be covered by the GeoSoft project.'''<br />
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{{#set:<br />
Owner=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
Progress=0|<br />
StartDate=2015-06-03|<br />
SubTask=Create_format_and_guidelines|<br />
SubTask=Plan_timeline_for_all_submissions|<br />
TargetDate=2015-09-29|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Collect_submissions&diff=12117Collect submissions2015-06-19T06:17:07Z<p>Yolanda: Set PropertyValue: StartDate = 2015-06-08</p>
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<div>[[Category:Task]]<br />
<br />
'''All expenses for the articles will be covered by the GeoSoft project.'''<br />
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{{#set:<br />
Owner=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
Progress=0|<br />
StartDate=2015-06-08|<br />
SubTask=Create_format_and_guidelines|<br />
SubTask=Plan_timeline_for_all_submissions|<br />
TargetDate=2015-09-29|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Create_format_and_guidelines&diff=12116Create format and guidelines2015-06-19T06:16:38Z<p>Yolanda: Set PropertyValue: StartDate = 2015-06-11</p>
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<div><br />
* [http://publications.agu.org/author-resource-center/author-guide/text-requirements/ Requirements from the publisher]<br />
** [http://publications.agu.org/files/2013/08/AGU-LaTeX.zip Latex templates]<br />
** [https://www.dropbox.com/s/8fb06gi5xnvgnls/WordTemplate.docx?dl=0 Sample Word template]<br />
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[[Category:Task]]<br />
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{{#set:<br />
Owner=Yolanda_Gil|<br />
Progress=20|<br />
StartDate=2015-06-11|<br />
TargetDate=2015-06-12|<br />
Type=Low}}</div>Yolandahttps://www.organicdatascience.org/gpf/index.php?title=Plan_special_issue&diff=12115Plan special issue2015-06-19T06:16:04Z<p>Yolanda: Added PropertyValue: SubTask = Develop GPF checklist</p>
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<div>[[Category:Task]]<br />
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{{#set:<br />
Expertise=Open_science|<br />
Owner=Yolanda_Gil|<br />
Participants=Chris_Duffy|<br />
Participants=Scott_Peckham|<br />
StartDate=2015-03-10|<br />
SubTask=Develop_GPF_checklist|<br />
SubTask=Develop_proposal_for_special_issue|<br />
SubTask=Approach_publisher_and_editors|<br />
SubTask=Collect_submissions|<br />
TargetDate=2015-09-30|<br />
Type=Medium}}</div>Yolanda