Document domain characteristics by Mimi Tzeng
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SubTasks
From Geoscience Paper of the Future
    TypeM
    low
    ProgressM
    60%
    Start dateM
    18th Apr 2015
    Target dateM
    1st May 2015
    Participants
    Not defined!
    Expertise
    open science
    geosciences
    Legend: M Mandatory | States: Not defined, Valid, Inconsistent with parent
    (Set PropertyValue: Progress = 20)
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    Expertise=Geosciences|
     
    Expertise=Geosciences|
     
    Owner=Mimi_Tzeng|
     
    Owner=Mimi_Tzeng|
    Progress=0|
    +
    Progress=20|
     
    StartDate=2015-04-18|
     
    StartDate=2015-04-18|
     
    TargetDate=2015-05-01|
     
    TargetDate=2015-05-01|
     
    Type=Low}}
     
    Type=Low}}

    Revision as of 18:14, 3 June 2015


    Details on how to do this task: Document domain characteristics

    As I understand this task, we are to take all of the variables used in the project and find the corresponding variable names from the CSDMS list. So to start, here are lists of all of my variables. I'm just going to directly copy-paste from my scripts (MOORprocess_all.m and MoorADCP.m) for starters. I imagine the publication-ready version of this will be in three columns: the "common" name of the variable as oceanographers would understand it, the name of the variable in my code, and the name of the variable in the CSDMS.

    YSI
    <ul>
    ctddepth{3} = YSI(:,6);
    ctdsal{3} = YSI(:,7);
    ctdtemp{3} = YSI(:,8);
    ctdpress{3} = YSI(:,9);
    %ctdpress{3}(1:length(ctdtimestamp{3})) = NaN;
    ctdcond{3} = YSI(:,10);
    ctdspcond{3} = YSI(:,11);
    ctdoxy{3} = YSI(:,13);
    ctdoxysat{3} = YSI(:,14);
    %ctdchla{3} = YSI(:,?);
    %ctdturb{3} = YSI(:,15);
    ctdturb{3}(1:length(ctdtimestamp{3})) = NaN; % a kludge for nonexistent variables in an existing package
    ctdtds{3} = YSI(:,15);
    </ul>
    
    CTDs
    <ul>
    ctdtemp{r} = CTD(:,1);
    ctdcond{r} = CTD(:,2);
    ctdpress{r} = CTD(:,3);
    ctdsal{r} = CTD(:,4);
    ctdsound{r} = CTD(:,5);
    ctdjday = CTD(:,6); %coming in, jday is Jan 1 = Day 1
    ctddens{r} = CTD(:,8);
    ctddepth{r} = CTD(:,9);
    ctdspcond{r} = CTD(:,10);
    </ul>
    
    Thermistors
    <ul>
    tempT{r} = dataT(:,1);
    pressT = dataT(:,2);
    depthT = cnv(:,2);
    </ul>
    
    CTD cast
    <ul>
    depth=datablock(:,3);
    sal=datablock(:,4);
    temp=datablock(:,5);
    dens=datablock(:,6);
    press=datablock(:,7);
    cond=datablock(:,8);
    spcond=datablock(:,9);
    oxy=datablock(:,10);
    oxysat=datablock(:,11);
    ph=datablock(:,12);
    chla=datablock(:,13);
    par=datablock(:,14);
    %cdom=datablock(:,15);
    cdom(1:length(scan)) = NaN;
    batt=datablock(:,15);
    xmiss=datablock(:,16);
    </ul>
    
    ADCP
    <ul>
    Pitch = AnP100thDeg *.01;
    Roll = AnR100thDeg *.01;
    East_u = SerEmmpersec * 0.1; % convert mm per sec to cm per sec
    North_v = SerNmmpersec * 0.1;
    Vert_w = SerVmmpersec * 0.1;
    VelError = SerErmmpersec * 0.1;
    Mag = SerMagmmpersec * 0.1;
    DIR = SerDir10thDeg * 0.1;
    </ul>
    


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